Pipeline: (2D) Organoid Area Analysis AI-Power

This pipeline segments organoids from 2D holotomographic projections using an AI-based model and performs morphological and refractive index-based analysis. It accurately defines the outer boundary of each organoid to extract quantitative parameters such as area, circularity, equivalent circular diameter (ECD), and mean refractive index (RI).

The pipeline is well-suited for high-throughput comparison of organoid size and structural characteristics across samples.
 

Output: Organoid mask, Organoid measurements




Access to analysis pipelines is available upon request. Please send your inquiry to info@tomocube.com to explore the options best suited to your needs.